dgit.raspbian.org Git - ncbi-blast+.git/commit

author	Aaron M. Ucko <ucko@debian.org>
	Wed, 27 Jan 2021 01:57:37 +0000 (20:57 -0500)
committer	Aaron M. Ucko <ucko@debian.org>
	Wed, 27 Jan 2021 01:57:37 +0000 (20:57 -0500)
commit	58169a3aff60f35bc1e7b04f127b57b0b2f39ab2
tree	a92bf17c883715c4c0711e8ab928c5824b7721df	tree \| snapshot
parent	b3639c90bbbae28778338fbe70b3a9babecc65e1	commit \| diff

New upstream version 2.11.0+ds

309 files changed:

c++/include/algo/blast/api/blast_aux.hpp		diff \| blob \| history
c++/include/algo/blast/api/blast_node.hpp	[new file with mode: 0644]	blob
c++/include/algo/blast/api/blast_usage_report.hpp	[new file with mode: 0644]	blob
c++/include/algo/blast/blastinput/blast_input.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/cmdline_flags.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/rpsblast_args.hpp		diff \| blob \| history
c++/include/algo/blast/blastinput/rpstblastn_args.hpp		diff \| blob \| history
c++/include/algo/blast/format/blast_format.hpp		diff \| blob \| history
c++/include/common/config/ncbiconf_msvc.h		diff \| blob \| history
c++/include/common/ncbi_export.h		diff \| blob \| history
c++/include/common/ncbi_package_ver.h		diff \| blob \| history
c++/include/common/ncbiconf_impl.h		diff \| blob \| history
c++/include/connect/ncbi_usage_report.hpp		diff \| blob \| history
c++/include/corelib/impl/ncbi_dbsvcmapper.hpp		diff \| blob \| history
c++/include/corelib/mswin_no_popup.h		diff \| blob \| history
c++/include/corelib/ncbi_system.hpp		diff \| blob \| history
c++/include/corelib/ncbiapp_api.hpp		diff \| blob \| history
c++/include/corelib/ncbidiag.hpp		diff \| blob \| history
c++/include/corelib/ncbimisc.hpp		diff \| blob \| history
c++/include/corelib/ncbistre.hpp		diff \| blob \| history
c++/include/corelib/request_ctx.hpp		diff \| blob \| history
c++/include/corelib/test_boost.hpp		diff \| blob \| history
c++/include/corelib/version.hpp		diff \| blob \| history
c++/include/corelib/version_api.hpp		diff \| blob \| history
c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp	[new file with mode: 0644]	blob
c++/include/ncbi_pch.hpp		diff \| blob \| history
c++/include/ncbi_source_ver.h		diff \| blob \| history
c++/include/ncbiconf.h		diff \| blob \| history
c++/include/objects/dbsnp/primary_track/impl/snpptis_impl.hpp		diff \| blob \| history
c++/include/objects/general/Dbtag.hpp		diff \| blob \| history
c++/include/objects/seqfeat/SeqFeatData.hpp		diff \| blob \| history
c++/include/objects/taxon1/local_taxon.hpp		diff \| blob \| history
c++/include/objects/valerr/ValidErrItem.hpp		diff \| blob \| history
c++/include/objmgr/impl/scope_impl.hpp		diff \| blob \| history
c++/include/objmgr/scope.hpp		diff \| blob \| history
c++/include/objmgr/util/autodef_options.hpp		diff \| blob \| history
c++/include/objmgr/util/indexer.hpp		diff \| blob \| history
c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/seqdb.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_writer/taxid_set.hpp		diff \| blob \| history
c++/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp		diff \| blob \| history
c++/include/objtools/cleanup/cleanup.hpp		diff \| blob \| history
c++/include/objtools/cleanup/cleanup_message.hpp	[new file with mode: 0644]	blob
c++/include/objtools/data_loaders/blastdb/bdbloader.hpp		diff \| blob \| history
c++/include/objtools/edit/feattable_edit.hpp		diff \| blob \| history
c++/include/objtools/edit/remote_updater.hpp		diff \| blob \| history
c++/include/objtools/format/flat_file_config.hpp		diff \| blob \| history
c++/include/objtools/format/flat_file_generator.hpp		diff \| blob \| history
c++/include/objtools/format/gather_items.hpp		diff \| blob \| history
c++/include/objtools/format/items/feature_item.hpp		diff \| blob \| history
c++/include/objtools/format/items/flat_qual_slots.hpp		diff \| blob \| history
c++/include/objtools/format/items/reference_item.hpp		diff \| blob \| history
c++/include/objtools/logging/listener.hpp		diff \| blob \| history
c++/include/objtools/logging/message.hpp		diff \| blob \| history
c++/include/objtools/pubseq_gateway/client/psg_client.hpp		diff \| blob \| history
c++/include/objtools/readers/fasta.hpp		diff \| blob \| history
c++/include/objtools/readers/fasta_reader_utils.hpp		diff \| blob \| history
c++/include/objtools/readers/gff2_reader.hpp		diff \| blob \| history
c++/include/objtools/readers/gff3_reader.hpp		diff \| blob \| history
c++/include/objtools/readers/gtf_reader.hpp		diff \| blob \| history
c++/include/objtools/readers/message_listener.hpp		diff \| blob \| history
c++/include/serial/grpc_integration/grpc_integration.hpp		diff \| blob \| history
c++/include/serial/grpc_integration/impl/grpc_support.hpp		diff \| blob \| history
c++/include/serial/rpcbase.hpp		diff \| blob \| history
c++/include/serial/rpcbase_impl.hpp		diff \| blob \| history
c++/include/serial/streamiter.hpp		diff \| blob \| history
c++/include/util/bitset/bm.h		diff \| blob \| history
c++/include/util/bitset/bmaggregator.h		diff \| blob \| history
c++/include/util/bitset/bmalgo.h		diff \| blob \| history
c++/include/util/bitset/bmalgo_impl.h		diff \| blob \| history
c++/include/util/bitset/bmalloc.h		diff \| blob \| history
c++/include/util/bitset/bmavx2.h		diff \| blob \| history
c++/include/util/bitset/bmblocks.h		diff \| blob \| history
c++/include/util/bitset/bmbmatrix.h		diff \| blob \| history
c++/include/util/bitset/bmbuffer.h		diff \| blob \| history
c++/include/util/bitset/bmconst.h		diff \| blob \| history
c++/include/util/bitset/bmdbg.h		diff \| blob \| history
c++/include/util/bitset/bmdef.h		diff \| blob \| history
c++/include/util/bitset/bmfunc.h		diff \| blob \| history
c++/include/util/bitset/bmgamma.h		diff \| blob \| history
c++/include/util/bitset/bmintervals.h	[new file with mode: 0644]	blob
c++/include/util/bitset/bmrandom.h		diff \| blob \| history
c++/include/util/bitset/bmrs.h		diff \| blob \| history
c++/include/util/bitset/bmserial.h		diff \| blob \| history
c++/include/util/bitset/bmsparsevec.h		diff \| blob \| history
c++/include/util/bitset/bmsparsevec_algo.h		diff \| blob \| history
c++/include/util/bitset/bmsparsevec_compr.h		diff \| blob \| history
c++/include/util/bitset/bmsparsevec_serial.h		diff \| blob \| history
c++/include/util/bitset/bmsparsevec_util.h		diff \| blob \| history
c++/include/util/bitset/bmsse2.h		diff \| blob \| history
c++/include/util/bitset/bmsse4.h		diff \| blob \| history
c++/include/util/bitset/bmsse_util.h		diff \| blob \| history
c++/include/util/bitset/bmstrsparsevec.h		diff \| blob \| history
c++/include/util/bitset/bmtimer.h		diff \| blob \| history
c++/include/util/bitset/bmundef.h		diff \| blob \| history
c++/include/util/bitset/bmutil.h		diff \| blob \| history
c++/include/util/bitset/bmxor.h		diff \| blob \| history
c++/include/util/bitset/encoding.h		diff \| blob \| history
c++/include/util/format_guess.hpp		diff \| blob \| history
c++/include/util/limited_size_map.hpp		diff \| blob \| history
c++/scripts/common/check/inspxe.sh		diff \| blob \| history
c++/scripts/common/check/tsan.supp		diff \| blob \| history
c++/scripts/common/impl/install.sh		diff \| blob \| history
c++/scripts/projects/blast/Manifest		diff \| blob \| history
c++/scripts/projects/blast/components.link		diff \| blob \| history
c++/scripts/projects/igblast/edit_imgt_file.pl		diff \| blob \| history
c++/scripts/projects/ncbi_gbench.lst		diff \| blob \| history
c++/scripts/projects/netschedule/ChangeLog		diff \| blob \| history
c++/scripts/projects/pubseq_gateway/ChangeLog		diff \| blob \| history
c++/scripts/projects/pubseq_gateway/project.lst		diff \| blob \| history
c++/src/CMakeLists.txt		diff \| blob \| history
c++/src/Makefile.in		diff \| blob \| history
c++/src/algo/blast/api/CMakeLists.xblast.lib.txt		diff \| blob \| history
c++/src/algo/blast/api/Makefile.xblast.lib		diff \| blob \| history
c++/src/algo/blast/api/blast_aux.cpp		diff \| blob \| history
c++/src/algo/blast/api/blast_node.cpp	[new file with mode: 0644]	blob
c++/src/algo/blast/api/blast_usage_report.cpp	[new file with mode: 0644]	blob
c++/src/algo/blast/blastinput/blast_input.cpp		diff \| blob \| history
c++/src/algo/blast/blastinput/cmdline_flags.cpp		diff \| blob \| history
c++/src/algo/blast/blastinput/rpsblast_args.cpp		diff \| blob \| history
c++/src/algo/blast/blastinput/rpstblastn_args.cpp		diff \| blob \| history
c++/src/algo/blast/core/blast_engine.c		diff \| blob \| history
c++/src/algo/blast/core/blast_kappa.c		diff \| blob \| history
c++/src/algo/blast/format/blast_format.cpp		diff \| blob \| history
c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp		diff \| blob \| history
c++/src/app/CMakeLists.txt		diff \| blob \| history
c++/src/app/Makefile.in		diff \| blob \| history
c++/src/app/blast/CMakeLists.rpsblast.app.txt		diff \| blob \| history
c++/src/app/blast/CMakeLists.rpstblastn.app.txt		diff \| blob \| history
c++/src/app/blast/Makefile.rpsblast.app		diff \| blob \| history
c++/src/app/blast/Makefile.rpstblastn.app		diff \| blob \| history
c++/src/app/blast/blast_app_util.cpp		diff \| blob \| history
c++/src/app/blast/blast_app_util.hpp		diff \| blob \| history
c++/src/app/blast/blast_formatter.cpp		diff \| blob \| history
c++/src/app/blast/blastn_app.cpp		diff \| blob \| history
c++/src/app/blast/blastp_app.cpp		diff \| blob \| history
c++/src/app/blast/blastx_app.cpp		diff \| blob \| history
c++/src/app/blast/deltablast_app.cpp		diff \| blob \| history
c++/src/app/blast/get_species_taxids.sh		diff \| blob \| history
c++/src/app/blast/legacy_blast.pl		diff \| blob \| history
c++/src/app/blast/psiblast_app.cpp		diff \| blob \| history
c++/src/app/blast/rpsblast_app.cpp		diff \| blob \| history
c++/src/app/blast/rpsblast_node.cpp	[new file with mode: 0644]	blob
c++/src/app/blast/rpsblast_node.hpp	[new file with mode: 0644]	blob
c++/src/app/blast/rpstblastn_app.cpp		diff \| blob \| history
c++/src/app/blast/rpstblastn_node.cpp	[new file with mode: 0644]	blob
c++/src/app/blast/rpstblastn_node.hpp	[new file with mode: 0644]	blob
c++/src/app/blast/tblastn_app.cpp		diff \| blob \| history
c++/src/app/blast/tblastx_app.cpp		diff \| blob \| history
c++/src/app/blast/update_blastdb.pl		diff \| blob \| history
c++/src/app/blastdb/CMakeLists.convert2blastmask.app.txt		diff \| blob \| history
c++/src/app/blastdb/blastdb_aliastool.cpp		diff \| blob \| history
c++/src/app/blastdb/blastdb_convert.cpp		diff \| blob \| history
c++/src/app/blastdb/blastdbcheck.cpp		diff \| blob \| history
c++/src/app/blastdb/blastdbcmd.cpp		diff \| blob \| history
c++/src/app/blastdb/blastdbcp.cpp		diff \| blob \| history
c++/src/app/blastdb/convert2blastmask.cpp		diff \| blob \| history
c++/src/app/blastdb/makeblastdb.cpp		diff \| blob \| history
c++/src/app/blastdb/makeprofiledb.cpp		diff \| blob \| history
c++/src/build-system/Makefile.mk.in		diff \| blob \| history
c++/src/build-system/Makefile.xcode.tmpl		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIComponents.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIComponentsMSVC.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIComponentsUNIX.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIComponentsUNIXex.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIComponentsXCODE.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIptb.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBIptb.ntest.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMake.NCBItoolkit.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMakeChecks.boost.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMakeChecks.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMakeChecks.compiler.cmake		diff \| blob \| history
c++/src/build-system/cmake/CMakeLists.top_builddir.txt		diff \| blob \| history
c++/src/build-system/cmake/cmake-cfg-unix.sh		diff \| blob \| history
c++/src/build-system/cmake/cmake-cfg-vs.bat		diff \| blob \| history
c++/src/build-system/cmake/cmake-cfg-xcode.sh		diff \| blob \| history
c++/src/build-system/cmake/cmake_configure_ext_gpipe.sh		diff \| blob \| history
c++/src/build-system/config.h.in		diff \| blob \| history
c++/src/build-system/configure		diff \| blob \| history
c++/src/build-system/configure.ac		diff \| blob \| history
c++/src/build-system/install.sh.in		diff \| blob \| history
c++/src/build-system/ncbi_package_version		diff \| blob \| history
c++/src/build-system/project_tree_builder.ini		diff \| blob \| history
c++/src/build-system/relocate.sh.in		diff \| blob \| history
c++/src/corelib/ncbi_param.cpp		diff \| blob \| history
c++/src/corelib/ncbi_stack.cpp		diff \| blob \| history
c++/src/corelib/ncbi_system.cpp		diff \| blob \| history
c++/src/corelib/ncbiapp.cpp		diff \| blob \| history
c++/src/corelib/ncbiargs.cpp		diff \| blob \| history
c++/src/corelib/ncbidiag.cpp		diff \| blob \| history
c++/src/corelib/ncbidiag_p.cpp		diff \| blob \| history
c++/src/corelib/ncbidiag_p.hpp		diff \| blob \| history
c++/src/corelib/ncbifile.cpp		diff \| blob \| history
c++/src/corelib/version.cpp		diff \| blob \| history
c++/src/dbapi/driver/dbapi_conn_factory.cpp		diff \| blob \| history
c++/src/dbapi/driver/dbapi_impl_context.cpp		diff \| blob \| history
c++/src/dbapi/driver/dbapi_pool_balancer.cpp		diff \| blob \| history
c++/src/dbapi/driver/dbapi_pool_balancer.hpp	[deleted file]	blob \| history
c++/src/objects/dbsnp/primary_track/snpptis.cpp		diff \| blob \| history
c++/src/objects/general/Dbtag.cpp		diff \| blob \| history
c++/src/objects/genomecoll/genomic_collections_cli.cpp		diff \| blob \| history
c++/src/objects/seq/Bioseq.cpp		diff \| blob \| history
c++/src/objects/seq/so_map.cpp		diff \| blob \| history
c++/src/objects/seqfeat/OrgMod.cpp		diff \| blob \| history
c++/src/objects/seqfeat/SeqFeatData.cpp		diff \| blob \| history
c++/src/objects/seqfeat/SubSource.cpp		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_ambiguous.inc		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_ambiguous.txt		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_replaced.inc		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_replaced.txt		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_specific.inc		diff \| blob \| history
c++/src/objects/seqfeat/ecnum_specific.txt		diff \| blob \| history
c++/src/objects/seqfeat/gc.inc		diff \| blob \| history
c++/src/objects/seqfeat/gc.prt		diff \| blob \| history
c++/src/objects/seqfeat/institution_codes.inc		diff \| blob \| history
c++/src/objects/seqfeat/institution_codes.txt		diff \| blob \| history
c++/src/objects/seqfeat/lat_lon_country.inc		diff \| blob \| history
c++/src/objects/seqloc/Seq_id.cpp		diff \| blob \| history
c++/src/objects/seqloc/accguide.inc		diff \| blob \| history
c++/src/objects/seqloc/accguide.txt		diff \| blob \| history
c++/src/objects/valerr/ValidErrItem.cpp		diff \| blob \| history
c++/src/objmgr/scope.cpp		diff \| blob \| history
c++/src/objmgr/scope_impl.cpp		diff \| blob \| history
c++/src/objmgr/tse_info.cpp		diff \| blob \| history
c++/src/objmgr/util/autodef.cpp		diff \| blob \| history
c++/src/objmgr/util/autodef_options.cpp		diff \| blob \| history
c++/src/objmgr/util/create_defline.cpp		diff \| blob \| history
c++/src/objmgr/util/feature_edit.cpp		diff \| blob \| history
c++/src/objmgr/util/indexer.cpp		diff \| blob \| history
c++/src/objtools/CMakeLists.txt		diff \| blob \| history
c++/src/objtools/Makefile.in		diff \| blob \| history
c++/src/objtools/alnmgr/alnvec.cpp		diff \| blob \| history
c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdb.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/build-alias-index		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/taxid_set.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp		diff \| blob \| history
c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp		diff \| blob \| history
c++/src/objtools/cleanup/CMakeLists.cleanup.lib.txt		diff \| blob \| history
c++/src/objtools/cleanup/Makefile.cleanup.lib		diff \| blob \| history
c++/src/objtools/cleanup/cleanup.cpp		diff \| blob \| history
c++/src/objtools/cleanup/cleanup_message.cpp	[new file with mode: 0644]	blob
c++/src/objtools/cleanup/cleanup_pub.cpp		diff \| blob \| history
c++/src/objtools/cleanup/cleanup_utils.hpp		diff \| blob \| history
c++/src/objtools/cleanup/newcleanupp.cpp		diff \| blob \| history
c++/src/objtools/data_loaders/blastdb/bdbloader.cpp		diff \| blob \| history
c++/src/objtools/data_loaders/genbank/reader.cpp		diff \| blob \| history
c++/src/objtools/edit/CMakeLists.edit.lib.txt		diff \| blob \| history
c++/src/objtools/edit/feattable_edit.cpp		diff \| blob \| history
c++/src/objtools/edit/loc_edit.cpp		diff \| blob \| history
c++/src/objtools/edit/remote_updater.cpp		diff \| blob \| history
c++/src/objtools/format/context.cpp		diff \| blob \| history
c++/src/objtools/format/dbsource_item.cpp		diff \| blob \| history
c++/src/objtools/format/defline_item.cpp		diff \| blob \| history
c++/src/objtools/format/feature_item.cpp		diff \| blob \| history
c++/src/objtools/format/flat_file_config.cpp		diff \| blob \| history
c++/src/objtools/format/flat_file_generator.cpp		diff \| blob \| history
c++/src/objtools/format/flat_qual_slots.cpp		diff \| blob \| history
c++/src/objtools/format/gather_items.cpp		diff \| blob \| history
c++/src/objtools/format/gbseq_formatter.cpp		diff \| blob \| history
c++/src/objtools/format/genbank_formatter.cpp		diff \| blob \| history
c++/src/objtools/format/genbank_gather.cpp		diff \| blob \| history
c++/src/objtools/format/genome_project_item.cpp		diff \| blob \| history
c++/src/objtools/format/inst_info_map.cpp		diff \| blob \| history
c++/src/objtools/format/inst_info_map.hpp		diff \| blob \| history
c++/src/objtools/format/primary_item.cpp		diff \| blob \| history
c++/src/objtools/format/qualifiers.cpp		diff \| blob \| history
c++/src/objtools/format/reference_item.cpp		diff \| blob \| history
c++/src/objtools/format/source_item.cpp		diff \| blob \| history
c++/src/objtools/logging/listener.cpp		diff \| blob \| history
c++/src/objtools/pubseq_gateway/client/psg_client.cpp		diff \| blob \| history
c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp		diff \| blob \| history
c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp		diff \| blob \| history
c++/src/objtools/readers/aln_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/aln_scanner_clustal.cpp		diff \| blob \| history
c++/src/objtools/readers/aln_scanner_nexus.cpp		diff \| blob \| history
c++/src/objtools/readers/aln_scanner_nexus.hpp		diff \| blob \| history
c++/src/objtools/readers/descr_mod_apply.cpp		diff \| blob \| history
c++/src/objtools/readers/fasta.cpp		diff \| blob \| history
c++/src/objtools/readers/fasta_exception.cpp		diff \| blob \| history
c++/src/objtools/readers/fasta_reader_utils.cpp		diff \| blob \| history
c++/src/objtools/readers/gff2_data.cpp		diff \| blob \| history
c++/src/objtools/readers/gff2_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/gff3_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/gtf_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/line_error.cpp		diff \| blob \| history
c++/src/objtools/readers/mod_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/readfeat.cpp		diff \| blob \| history
c++/src/objtools/readers/rm_reader.cpp		diff \| blob \| history
c++/src/objtools/readers/source_mod_parser.cpp		diff \| blob \| history
c++/src/serial/grpc_integration/grpc_integration.cpp		diff \| blob \| history
c++/src/serial/rpcbase.cpp		diff \| blob \| history
c++/src/util/format_guess.cpp		diff \| blob \| history

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